# Install Community Edition

TIP

If you experiment any issues, please describe your problem precisely in our ticket system on Github. (opens new window)

WARNING

This version opens a new way to manage data within Cytomine. It is recommended for new projects starting from scratch, but not to upgrade projects already using any Cytomine Community Edition Legacy (version 2 or 3).

# Prerequisites

A cluster must be installed and running before proceeding with the installation. See Clusters.

# Installation

This installation procedure is intended for desktop or laptop computers running Debian-based Linux operating systems.

It is expected to have root permissions (sudo privileges in Debian/Ubuntu).

Clone the repository on your computer:

git clone --branch CE2025.1 https://github.com/cytomine/Cytomine-community-edition.git

Go into the cloned folder:
```
cd Cytomine-community-edition
```
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Edit the file cytomine.template if you want to change default values (like URLs and/or SMTP setup)

WARNING

The variable SCHEDULER_MASTER_URL and SCHEDULER_OAUTH_TOKEN have to be set to the value generated by your cluster in order to use the App Engine. See MicroK8s Cytomine configuration for more information on how to get these values.

Launch the Cytomine installer. This will create all the folders and files necessary to launch Cytomine with Compose:

sudo docker pull cytomine/installer
sudo docker run -v $(pwd):/install --user "$(id -u):$(id -g)" --rm -it cytomine/installer:latest deploy -s /install

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Launch cytomine:
```
sudo docker compose up -d
```
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Cytomine is ready to be used:
- If you have kept the default values your Cytomine is now available on http://localhost/ (opens new window).
- By default, an admin account has been created for you. To connect to the platform in your browser, retrieve the randomly generated admin password by opening the cytomine.yml file and go to services: default: core : constant: ADMIN_PASSWORD:. You can use this password with the adminusername to get authenticated on your Cytomine.

TIP

Once authenticated, it is recommended to update the default administrator password to a more secure password.

# Update configuration

To modify the configuration of a running instance:

Update the configuration in the cytomine.template file.

Relaunch the Cytomine installer to apply the updates to your configuration file:

sudo docker pull cytomine/installer
sudo docker run -v $(pwd):/install --user "$(id -u):$(id -g)" --rm -it cytomine/installer:latest deploy -s /install

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Restart your running instance:
```
sudo docker compose restart
```
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# Stop Cytomine

To stop your Cytomine instance:

sudo docker compose down

The server will be stopped, but the data, including databases and images, will be preserved.

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