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Welcome to the Cytomine-ULiège documentation related to the Cytomine Research & Development version from the research team at Montefiore Institute, University of Liege, Belgium.

If you want to use the stable Cytomine version maintained by Cytomine cooperative company, please use To find information about the official stable version, please read the official documentation from Cytomine cooperative company.



It is recommended to start by reading the main Cytomine overview page for a short introduction on Cytomine main concepts
Then the documentation is organized in four main sections below for administrators/operators, developers, data/computer scientists, and end-users.
For testing the Cytomine Research and Development version, you can either:

  1. Install a Cytomine instance on your own computer (laptop/desktop), on a server at our own site (intranet-only or worldwide internet access), on in the cloud, or 
  2. Access our demo instance available here: http://demo.cytomine.be/ (see Cytomine User Guide for usernames/passwords or request a personal account).
  3. Contact us for hosting/installation options.



Panel
titleDevelopments

Documentation for software developers:




Panel
titleUsers

Documentation for end users (biologists,...):







Cite our work:

(Marée et al., Bioinformatics 2016) DOI: 10.1093/bioinformatics/btw013


Contact us:

E-mail: info@cytomine.org

Github: https://github.com/cytomine (Official version) and  https://github.com/cytomine-uliege/ (ULiège research latest developments)

Main website: http://www.cytomine.org/